igrouper

Interactive command line interface to EGEGrouper.

class egegrouper.igrouper.DialogText(data_dict)

Text dialog for input fields values.

This dialog processes data in the dictionary with keys which correspond attributes of group.

input()

Process input data.

rlineinput(prompt, prefill='')

Output existing value to the edit area.

class egegrouper.igrouper.GrouperShell

Class for processing user’s commands.

default(line)

This method called if user gives not existing command.

Here the aliases processed.

Parameters:line (str) – User’s command.

do_add_group(arg)

add_group

Add new group.

Aliases: ag

do_add_to_group(arg)

add_to_group exam_id group_id

Add examination to group.

Aliases: at

do_db_info(arg)

Print information about database.

Aliases: d

do_delete_exam(arg)

delete_exam id

Delete examination from database.

Aliases: de

do_delete_from_group(arg)

delete_from_group exam_id group_id

Delete examination from group.

Aliases: df

do_delete_group(arg)

delete_group id

Delete group

Aliases: dg

do_edit_group(arg)

edit_group group_id

Edit attributes of selected group.

do_exam_info(arg)

exam_info id

Print information about examination.

Aliases: e

do_export_json(arg)

export_json exam_id file_name

Export examination to JSON file.

Aliases: ej

do_group_info(arg)

group_info id

Print information about group.

Aliases: g

do_import_gs(arg)

import_gs file_name

Import records from Gastroscan sqlite database.

do_import_json(arg)

import_json file_name

Add examination from JSON file.

Aliases: aj

do_import_sme(arg)

import_sme file_name

Add records from SME database.

do_merge_exams(arg)

merge_exams exam_id_1 exam_id_2

Merge two examinations.

do_plot_exam(arg)

plot_exam id

Plot signals of examination.

Aliases: p

do_quit(arg)

Close database and exit.

do_stats(arg)

stats [age|gender|diagnosis] group_id

Print some statistic of group.

Special values for group_id:

0 - Ungrouped exams. * - All exams.

Examples

stats gender 1 stats diagnosis 0 stats age *

do_where_is(arg)

where_is id

Show where is examination.

Aliases: we

egegrouper.igrouper.main()

Entry point.